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Files Filesets

Query Parameters

file_fileset_id
string
fileset_id
string
lab
enum<string>
Available options:
alan-boyle,
bill-majoros,
charles-gersbach,
doug-fowler,
gary-hon,
j-michael-cherry,
jay-shendure,
jesse-engreitz,
karen-mohlke,
kushal-dey,
lea-starita,
luca-pinello,
marc-vidal,
mark-craven,
nadav-ahituv,
predrag-radivojac,
thomas-quertermous,
tim-reddy,
zhiping-weng
preferred_assay_title
enum<string>
Available options:
CRISPR FACS screen,
CRISPR FlowFISH screen,
DNase-seq,
DUAL-IPA,
MPRA,
Parse Perturb-seq,
Perturb-seq,
SGE,
STARR-seq,
TAP-seq,
VAMP-seq,
VAMP-seq (MultiSTEP),
Variant-EFFECTS,
electroporated MPRA,
lentiMPRA,
scATAC-seq,
scCRISPR screen,
snATAC-seq
method
enum<string>
Available options:
BlueSTARR,
CRISPR screen,
DUAL-IPA,
ENCODE-rE2G,
ESM-1v,
MPRA,
MutPred2,
Perturb-seq,
SEMVAR,
SGE,
STARR-seq,
VAMP-seq,
VAMP-seq (MultiSTEP),
Variant-EFFECTS,
cV2F,
caQTL,
candidate Cis-Regulatory Elements,
elements,
scATAC-seq,
scE2G,
snATAC-seq
crispr_modality
enum<string>
Available options:
activation,
base editing,
interference,
knockout,
prime editing
donor_id
string
sample_term
string
sample_summary
string
software
enum<string>
Available options:
2024_multistep,
BCalm,
BEDTools,
BIRD,
BlueSTARR,
CRISPR-Millipede,
CRISPResso2,
Cooler,
CountESS,
DESeq2,
DUAL-IPA analysis scripts,
Distal regulation ENCODE-rE2G,
DistalRegulationCRISPRdata,
ESM-1v,
FRACTEL,
MPRAflow tsv-to-bed,
MutPred2,
NumPy,
Pysam,
SEMVAR,
SGE Pipeline,
Samtools,
Sceptre,
SciPy,
Seaborn,
Seurat,
Snakemake,
Straw,
Variant-EFFECTS,
bigWigAverageOverBed,
cV2F,
cyp2c19_2c9,
matplotlib,
mpralm,
pandas,
pySpade,
pybedtools,
scATAC-seq processing scripts,
scE2G,
statsmodels
cell_annotation
enum<string>
Available options:
extraembryonic parietal endodermal cell,
extraembryonic visceral endodermal cell,
intermediate extraembryonic parietal endodermal cell,
mesodermal cell,
neurectodermal cell,
pluripotent epiblast cell,
surface ectodermal cell
Available options:
true,
false
source
enum<string>
Available options:
ENCODE,
IGVF
class
enum<string>
Available options:
biological relationship,
observed data,
prediction
page
number
default:0
limit
number

Response

Successful response

_id
string
required
file_set_id
string
required
lab
string
required
method
string
required
class
string
required
source
string
required
source_url
string
required
preferred_assay_titles
string[] | null
assay_term_ids
string[] | null
software
string[] | null
collections
string[] | null
samples
string[] | null
sample_ids
string[] | null
simple_sample_summaries
string[] | null
donors
string[] | null
cell_annotation
string | null
crispr_modality
string | null