Gene Regulatory Network
curl --request GET \
--url https://catalog-api-dev.demo.igvf.org/api/gene-regulatory-networkimport requests
url = "https://catalog-api-dev.demo.igvf.org/api/gene-regulatory-network"
response = requests.get(url)
print(response.text)const options = {method: 'GET'};
fetch('https://catalog-api-dev.demo.igvf.org/api/gene-regulatory-network', options)
.then(res => res.json())
.then(res => console.log(res))
.catch(err => console.error(err));[
{
"response_gene": "<string>",
"genomic_element": {
"chr": "<string>",
"start": 123,
"end": 123,
"regulator_gene": "<string>"
},
"class": "<string>",
"method": "<string>",
"source": "<string>",
"biological_context": "<string>",
"files_filesets": "<string>",
"crispr_modality": "<string>",
"log2FC": 123,
"neg_log10_pvalue": 123,
"neg_log10_pvalue_adj": 123
}
]{
"message": "<string>",
"code": "<string>",
"issues": [
{
"message": "<string>"
}
]
}API Reference
Gene Regulatory Network
Retrieve regulatory or response genes for a given regulatory gene. The network is modeled as: (regulators) -> (responses).
The limit parameter controls the page size and can not exceed 100.
Pagination is 0-based.
Examples by method
These examples are grouped by method; use the method filter to return data from a specific method.
CRISPR screen:
Single result
- regulator_gene_id = ENSG00000143190
- p_value = gte:0.9
- method = CRISPR screen
Group results
- regulator_gene_name = POU2F1
- method = CRISPR screen
Perturb-seq:
Query by regulator gene
- regulator_gene_id = ENSG00000143190
- method = Perturb-seq
Query by response gene
- response_gene_name = TSPAN6
- method = Perturb-seq
Gene Regulatory Network
curl --request GET \
--url https://catalog-api-dev.demo.igvf.org/api/gene-regulatory-networkimport requests
url = "https://catalog-api-dev.demo.igvf.org/api/gene-regulatory-network"
response = requests.get(url)
print(response.text)const options = {method: 'GET'};
fetch('https://catalog-api-dev.demo.igvf.org/api/gene-regulatory-network', options)
.then(res => res.json())
.then(res => console.log(res))
.catch(err => console.error(err));[
{
"response_gene": "<string>",
"genomic_element": {
"chr": "<string>",
"start": 123,
"end": 123,
"regulator_gene": "<string>"
},
"class": "<string>",
"method": "<string>",
"source": "<string>",
"biological_context": "<string>",
"files_filesets": "<string>",
"crispr_modality": "<string>",
"log2FC": 123,
"neg_log10_pvalue": 123,
"neg_log10_pvalue_adj": 123
}
]{
"message": "<string>",
"code": "<string>",
"issues": [
{
"message": "<string>"
}
]
}Query Parameters
Available options:
CRISPR screen, Perturb-seq Response
Successful response
Show child attributes
Show child attributes