Variants Variant Linkage Disequilibrium
curl --request GET \
--url https://catalog-api-dev.demo.igvf.org/api/variants/variant-ldimport requests
url = "https://catalog-api-dev.demo.igvf.org/api/variants/variant-ld"
response = requests.get(url)
print(response.text)const options = {method: 'GET'};
fetch('https://catalog-api-dev.demo.igvf.org/api/variants/variant-ld', options)
.then(res => res.json())
.then(res => console.log(res))
.catch(err => console.error(err));[
{
"chr": "<string>",
"ancestry": "<string>",
"d_prime": 123,
"r2": 123,
"label": "<string>",
"variant_1_base_pair": "<string>",
"variant_1_rsid": "<string>",
"variant_2_base_pair": "<string>",
"variant_2_rsid": "<string>",
"name": "<string>",
"variant_1_pos": 123,
"variant_1_spdi": "<string>",
"variant_1_hgvs": "<string>",
"variant_2_pos": 123,
"variant_2_spdi": "<string>",
"variant_2_hgvs": "<string>",
"source": "<string>",
"source_url": "<string>",
"sequence_variant": "<string>"
}
]{
"message": "<string>",
"code": "<string>",
"issues": [
{
"message": "<string>"
}
]
}API Reference
Variants Variant Linkage Disequilibrium
Retrieve genetic variants in linkage disequilibrium (LD).
The following parameters can be used to set thresholds on r2 and d_prime: gt (>), gte (>=), lt (<), lte (<=).
Set verbose = true to retrieve full info on the variants.
At least one of these fields is required: variant_id, spdi, hgvs, rsid, ca_id, or region.
Example: variant_id = NC_000011.10:9083634:A:T,
spdi = NC_000011.10:9083634:A:T,
hgvs = NC_000011.10:g.9083635A>T,
rsid = rs60960132,
ca_id = CA217534780,
region = chr17:7166090-7166095 (maximum length: 10kb),
r2 = gte:0.8,
d_prime = gt:0.9,
ancestry = EUR.
The limit parameter controls the page size and can not exceed 500.
Pagination is 0-based.
Variants Variant Linkage Disequilibrium
curl --request GET \
--url https://catalog-api-dev.demo.igvf.org/api/variants/variant-ldimport requests
url = "https://catalog-api-dev.demo.igvf.org/api/variants/variant-ld"
response = requests.get(url)
print(response.text)const options = {method: 'GET'};
fetch('https://catalog-api-dev.demo.igvf.org/api/variants/variant-ld', options)
.then(res => res.json())
.then(res => console.log(res))
.catch(err => console.error(err));[
{
"chr": "<string>",
"ancestry": "<string>",
"d_prime": 123,
"r2": 123,
"label": "<string>",
"variant_1_base_pair": "<string>",
"variant_1_rsid": "<string>",
"variant_2_base_pair": "<string>",
"variant_2_rsid": "<string>",
"name": "<string>",
"variant_1_pos": 123,
"variant_1_spdi": "<string>",
"variant_1_hgvs": "<string>",
"variant_2_pos": 123,
"variant_2_spdi": "<string>",
"variant_2_hgvs": "<string>",
"source": "<string>",
"source_url": "<string>",
"sequence_variant": "<string>"
}
]{
"message": "<string>",
"code": "<string>",
"issues": [
{
"message": "<string>"
}
]
}Query Parameters
Available options:
AFR, EAS, EUR, SAS Available options:
Homo sapiens Available options:
true, false Response
Successful response