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Enhancer-Gene Predictions

This table reports which enhancers are predicted to regulate this gene from the ENCODE-rE2G model, and associated cell types. Each row reports one predicted enhancer and cell type.
ColumnDescription
Cell TypeCell type in which the enhancer is predicted to regulate the gene
ScoreStrength of the prediction (range: 0 to 1, higher indicates a more confident prediction)
StartGenomic start coordinate of the enhancer
EndGenomic end coordinate of the enhancer
DatasetSource dataset
ModelPredictive model. Currently: ENCODE-rE2G
Distance (Enhancer to gene)Genomic distance between the enhancer and gene body
Currently, this table includes predictions from the ENCODE-rE2G model across 1700+ ENCODE biosamples (see Gschwind et al. bioRxiv 2023) The table is initially sorted by Score in descending order, showing the strongest predictions first.

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Proteins Table

This table displays information about proteins associated with the gene.
ColumnDescription
Protein IDUnique identifier for the protein (click for more details)
Protein NameCommon name of the protein
Full NameComplete scientific name of the protein
SourceOrigin of the protein information (click for source details if available)

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Transcripts Table

This table shows different transcripts (RNA versions) of the gene.
ColumnDescription
RegionGenomic location of the transcript (click to view the region)
Transcript IDUnique identifier for the transcript (click for more details)
Transcript NameName of the transcript (click for more information)
Gene NameName of the gene this transcript belongs to (click for gene details)
SourceOrigin of the transcript information (click for source details if available)
VersionVersion number of the transcript information

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Variants Table

This table presents genetic variants associated with the gene.
ColumnDescription
RegionGenomic location of the variant (click to view the region)
rsIDReference SNP ID(s) for the variant (click for more details)
SourceOrigin of the variant information (click for source details if available)
SPDIA standardized representation of the variant