Regulatory Graph
The Regulatory Graph displays information about regulatory regions within the genomic coordinates you’re viewing.Table Columns:
| Column | Description |
|---|---|
| Region | Genomic coordinates of the regulatory region (clickable for more details) |
| Biochemical Activity | The type of biochemical activity in this region |
| Biochemical Activity Description | Detailed description of the biochemical activity |
| Type | Classification of the regulatory region |
| Source | Origin of the data |
| Source URL | Link to the original data source (clickable) |
Interacting with the Table:
- Click on column headers to sort the table by that column
- Use the search box above the table to filter results
- Adjust the number of rows displayed using the dropdown menu
- Navigate between pages using the “Previous” and “Next” buttons
Biosample Table
The Biosample Table provides information about biological samples associated with the regulatory regions in your selected genomic coordinates.Table Columns:
| Column | Description |
|---|---|
| Activity Score | Numerical score indicating the level of activity (higher is more active) |
| Source | Origin of the biosample data (clickable link) |
| Chromosome, Region Start, Region End | Location of the associated regulatory region |
| Region Name, Region Type | Identifiers for the regulatory region |
| Biochemical Activity, Activity Description | Details about the biochemical activity in the region |
| Biosample Name | Name of the biological sample |
| Term ID | Unique identifier for the biosample |
| Description | Detailed description of the biosample |
| Biosample Source | Origin of the biosample |
| Subontology | Subclassification of the biosample, if applicable |
Enhancer-Gene Prediction(s)
This table reports whether the query region contains predicted enhancers from the ENCODE-rE2G model, and their target genes and cell types. Each row reports one predicted enhancer, target gene, and cell type.| Column | Description |
|---|---|
| Cell Type | Cell type in which the enhancer is predicted to regulate the gene |
| Target Gene | Gene predicted to be regulated by the enhancer |
| Score | Strength of the prediction (range: 0 to 1, higher indicates a more confident prediction) |
| Dataset | Source dataset |
| Model | Predictive model. Currently: ENCODE-rE2G |
| Variant-Gene Distance | Genomic distance between the variant and gene body |